Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpl7l1Ribosomal protein L7-like 1. (247 aa)    
Predicted Functional Partners:
faub
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.992
faua
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.992
rpl6
Ribosomal protein L6.
  
 
 0.988
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.987
rps13
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 
 0.986
rpl39
Ribosomal protein L39.
   
 
 0.986
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.986
rpl19
60S ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 
 0.986
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
  
 
 0.986
rpl31
Ribosomal protein L31.
   
 
 0.986
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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