STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyp4f3Cytochrome P450, family 4, subfamily F, polypeptide 3; Belongs to the cytochrome P450 family. (313 aa)    
Predicted Functional Partners:
alox5b.2
Arachidonate 5-lipoxygenase b, tandem duplicate 2.
    
 0.974
alox5b.1
Arachidonate 5-lipoxygenase b, tandem duplicate 1.
    
 0.974
zgc:101699
Zgc:101699.
   
 
 0.965
ENSDARP00000134695
Si:ch73-55i23.1.
     
 0.965
LOC100148581
Si:ch73-55i23.1.
     
 0.961
alox5a
Arachidonate 5-lipoxygenase a.
   
 0.955
lta4h
Leukotriene A(4) hydrolase; Belongs to the peptidase M1 family.
    
 0.945
pla2g4f.1
Phospholipase A2.
     
 0.942
pla2g4f.2
Phospholipase A2.
     
 0.942
cyp2u1
Cytochrome P450, family 2, subfamily U, polypeptide 1; Belongs to the cytochrome P450 family.
  
0.941
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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