STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylbXylulokinase homolog (H. influenzae). (529 aa)    
Predicted Functional Partners:
sord
Sorbitol dehydrogenase.
  
 
 0.965
gpd2
Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).
  
 
 0.962
tktb
Transketolase b.
  
 
 0.944
tkta
Transketolase a.
  
 
 0.944
fuom
Fucose mutarotase; Involved in the interconversion between alpha- and beta-L- fucoses; Belongs to the RbsD / FucU family.
  
 
 0.941
cryzl1
Crystallin, zeta (Quinone reductase)-like 1.
     
 0.902
add3a
Adducin 3 (gamma) a.
  
 
 0.881
add3b
Adducin 3 (gamma) b.
  
 
 0.881
add2
Adducin 2 (beta).
  
 
 0.881
add1
Adducin 1 (Alpha).
  
 
 0.881
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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