STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc124Coiled-coil domain-containing protein 124; Required for proper progression of late cytokinetic stages. (216 aa)    
Predicted Functional Partners:
faub
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.992
faua
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.992
rps19
Ribosomal protein S19.
   
 
 0.904
rps5
Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
   
 
 0.903
rpl11
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.893
rpl8
60S ribosomal protein L8; Component of the large ribosomal subunit.
   
 
 0.893
rpl10
60S ribosomal protein L10; Component of the large ribosomal subunit (Probable). Plays a role in the formation of actively translating ribosomes. Plays a role in the embryonic brain development.
   
 
 0.890
rps21
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
   0.884
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.883
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
   0.880
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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