STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rph3alRabphilin 3A-like (without C2 domains). (328 aa)    
Predicted Functional Partners:
doc2d
Double C2-like domains, delta.
 
    
 0.997
rph3aa
Rabphilin 3A homolog (mouse), a.
 
    
 0.981
btr29
Bloodthirsty-related gene family, member 29.
      
 0.975
ptrh1
Peptidyl-tRNA hydrolase 1 homolog.
      
 0.935
esyt2a
Extended synaptotagmin-like protein 2a.
      
 0.871
doc2a
Double C2-like domains, alpha.
 
      0.871
syt19
C2 domain-containing protein.
   
  
 0.844
pde11al
Phosphodiesterase.
   
  
 0.841
pde11a
Phosphodiesterase.
   
  
 0.839
esyt1a
Extended synaptotagmin-like protein 1a.
      
 0.746
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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