STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zgc:113307Zgc:113307. (363 aa)    
Predicted Functional Partners:
nrxn1a
Neurexin-1a-beta; Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May play a role in formation or maintenance of synaptic junctions; Belongs to the neurexin family.
    
  0.559
NRXN2
Neurexin 2.
    
  0.559
fmodb
Fibromodulin b.
  
 
 
0.507
lrrtm4l2
Leucine-rich repeat transmembrane neuronal 4-like 2.
  
  
 
0.497
lrrtm4l1
Leucine-rich repeat transmembrane neuronal 4-like 1.
  
  
 
0.488
zgc:171776
Zgc:171776.
    
   0.480
adgrl2b.1
Adhesion G protein-coupled receptor L2b, tandem duplicate 1.
    
   0.480
zgc:171781
Zgc:171781.
    
   0.480
F1R0Z3_DANRE
Si:dkey-179j5.5.
    
   0.480
LOC110438301
Si:ch211-226h8.6.
    
   0.480
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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