STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lamb1bLaminin, beta 1b. (1767 aa)    
Predicted Functional Partners:
cd44b
CD44 molecule (Indian blood group) b.
     
 0.901
lama4
Laminin, alpha 4.
   
0.870
lamc2
Laminin, gamma 2.
   
 
0.804
lama5
Laminin, alpha 5.
   
0.787
lamc1
Laminin subunit gamma-1; Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
   
 
0.784
lamc3
Laminin, gamma 3.
   
 
0.772
itga6b
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
   
 0.732
Itga7
Uncharacterized protein.
    
 0.731
fndc3a
Fibronectin type III domain-containing 3A.
      
 0.719
itgb1b.1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.716
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.