STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zgc:110216Zgc:110216. (201 aa)    
Predicted Functional Partners:
hmgb2a
High mobility group box 2a.
   
 0.547
hmgb1a
High mobility group box 1a.
   
 0.545
dffb
DNA fragmentation factor, beta polypeptide (caspase-activated DNase).
    
 0.527
zgc:110425
Zgc:110425.
  
 
 
0.456
kpnb1
Karyopherin (importin) beta 1.
    
   0.438
h1-0
H1 histone family, member 0.
   
0.423
B0R0K9_DANRE
Si:ch211-103n10.5.
  
  
 
0.415
E7FAU1_DANRE
Si:dkey-108k21.14.
  
  
 
0.406
X1WCD4_DANRE
Si:dkey-108k21.21.
  
  
 
0.406
ENSDARP00000142167
Si:ch73-368j24.11.
  
  
 
0.406
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.