STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcp4aPurkinje cell protein 4a. (63 aa)    
Predicted Functional Partners:
irx2a
Iroquois homeobox 2a.
      
 0.740
msx2b
Homeobox protein MSH-D; Involved in the development of the inner ear; Belongs to the Msh homeobox family.
   
  
 0.649
sncga
Synuclein, gamma a; Belongs to the synuclein family.
   
  
 0.622
sncgb
Synuclein, gamma b (breast cancer-specific protein 1); Belongs to the synuclein family.
   
  
 0.576
sox19a
Transcription factor Sox-19a; Transcriptional activator.
      
 0.540
amigo1
Adhesion molecule with Ig-like domain 1.
      
 0.467
pvalb6
Parvalbumin isoform 4b; Belongs to the parvalbumin family.
   
 
 0.466
hmgb3a
High mobility group box 3a.
   
  
 0.455
ccnl1b
Cyclin-L1; Involved in pre-mRNA splicing.
      
 0.451
ubxn4
UBX domain protein 4.
      
 0.450
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.