STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdzd11PDZ domain-containing protein 11. (142 aa)    
Predicted Functional Partners:
tspan33b
Tetraspanin.
    
 
 0.949
zgc:113223
Tetraspanin.
    
 
 0.934
slc5a6a
Solute carrier family 5 member 6a; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
    
 0.928
atp7a
ATPase copper-transporting alpha.
    
 0.925
smco4
Single-pass membrane protein with coiled-coil domains 4.
      
 0.832
cntnap5l
Contactin-associated protein family member 5-like.
    
 
 0.810
plekha5
Pleckstrin homology domain-containing, family A member 5.
    
 
 0.753
atox1
Antioxidant 1 copper chaperone.
     
  0.750
psmd9
Proteasome 26S subunit, non-ATPase 9.
    
 
 0.748
tspan33a
Tetraspanin-33.
    
 
 0.747
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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