STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam189a1Family with sequence similarity 189 member A1. (199 aa)    
Predicted Functional Partners:
csnk1g2a
Casein kinase 1, gamma 2a; Belongs to the protein kinase superfamily.
    
 
 0.750
apba2b
Amyloid beta (A4) precursor protein-binding, family A, member 2b.
   
  
 0.746
oca2
Oculocutaneous albinism II.
   
  
 0.541
edar
Ectodysplasin A receptor.
      
 0.482
rabif
RAB-interacting factor.
    
 
 0.471
prpf18
Pre-mRNA-splicing factor 18; Participates in the second step of pre-mRNA splicing.
   
  
 0.455
slc24a5
Sodium/potassium/calcium exchanger 5; Cation exchanger which plays a central role in pigmentation, possibly by participating in ion transport in melanosomes. Probably transports 1 Ca(2+) and 1 K(+) in exchange for 4 Na(+). Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. SLC24A subfamily.
   
  
 0.454
LOC108191316
Collagen, type VI, alpha 3.
    
 
 0.454
col6a3
Collagen, type VI, alpha 3.
    
 
 0.454
itga3b
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
      
 0.444
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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