STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsf1b.1Remodeling and spacing factor 1b, tandem duplicate 1. (1910 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily a, member 5.
   
 0.961
si:dkey-4c2.11
Si:dkey-4c2.11.
      
 0.935
bptf
Bromodomain PHD finger transcription factor.
   
 
 0.798
snrpb2
Small nuclear ribonucleoprotein polypeptide B2.
    
 
 0.768
mbtd1
Mbt domain-containing 1.
   
 
 0.761
zbtb24
Zinc finger and BTB domain-containing protein 24; May be involved in BMP2-induced transcription. Belongs to the krueppel C2H2-type zinc-finger protein family.
   
 
 0.753
mboat2a
Membrane-bound O-acyltransferase domain-containing 2a; Belongs to the membrane-bound acyltransferase family.
      
 0.740
cryabb
Crystallin, alpha B, b; Belongs to the small heat shock protein (HSP20) family.
   
  
 0.720
baz1b
Tyrosine-protein kinase BAZ1B; Atypical tyrosine-protein kinase that plays a central role in chromatin remodeling and acts as a transcription regulator. Involved in DNA damage response by phosphorylating 'Tyr-142' of histone H2AX (H2AXY142ph). H2AXY142ph plays a central role in DNA repair and acts as a mark that distinguishes between apoptotic and repair responses to genotoxic stress. Essential component of the WICH complex, a chromatin remodeling complex that mobilizes nucleosomes and reconfigures irregular chromatin to a regular nucleosomal array structure. The WICH complex regulates [...]
    
0.681
chrac1
Chromatin accessibility complex subunit 1.
    
 0.676
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.