STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf148Zinc finger protein 148; Involved in transcriptional regulation. Represses the transcription of a number of genes. Required for primitive and definitive hematopoiesis during embryonic development. Belongs to the krueppel C2H2-type zinc-finger protein family. (808 aa)    
Predicted Functional Partners:
prkcha
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 
 0.861
ankha
ANKH inorganic pyrophosphate transport regulator a.
      
 0.800
ptpn9a
Protein tyrosine phosphatase non-receptor type 9a.
      
 0.735
ptpn9b
Protein tyrosine phosphatase non-receptor type 9b.
      
 0.729
zfpm1
Zinc finger protein ZFPM1; Transcription regulator that modulates expression mediated by transcription factors of the GATA family. Cofactor that acts via the formation of a heterodimer with transcription factors of the GATA family. Such heterodimer can both activate or repress transcriptional activity, depending on the cell and promoter context (By similarity).
   
  
 0.693
kank1b
KN motif and ankyrin repeat domains 1b.
    
 
 0.679
gata1a
GATA-binding protein 1a.
    
 
 0.665
las1l
LAS1-like ribosome biogenesis factor.
   
 
 0.619
akirin2
Akirin 2.
    
 
 0.570
fam49ba
Family with sequence similarity 49 member Ba.
      
 0.566
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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