Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
blm | dna2 | ENSDARP00000153051 | ENSDARP00000103307 | BLM RecQ-like helicase. | DNA replication helicase/nuclease 2. | 0.960 |
blm | exo1 | ENSDARP00000153051 | ENSDARP00000073846 | BLM RecQ-like helicase. | Exonuclease 1; 5'->3' double-stranded DNA exonuclease which may also contain a cryptic 3'->5' double-stranded DNA exonuclease activity. Also exhibits endonuclease activity against 5'-overhanging flap structures similar to those generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Required for DNA mismatch repair (MMR) (By similarity). | 0.992 |
blm | mlh1 | ENSDARP00000153051 | ENSDARP00000113460 | BLM RecQ-like helicase. | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | 0.969 |
blm | mre11a | ENSDARP00000153051 | ENSDARP00000139437 | BLM RecQ-like helicase. | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.971 |
blm | msh2 | ENSDARP00000153051 | ENSDARP00000027768 | BLM RecQ-like helicase. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.754 |
blm | msh6 | ENSDARP00000153051 | ENSDARP00000131172 | BLM RecQ-like helicase. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.884 |
blm | pms2 | ENSDARP00000153051 | ENSDARP00000099444 | BLM RecQ-like helicase. | PMS1 homolog 2, mismatch repair system component. | 0.672 |
blm | rad51 | ENSDARP00000153051 | ENSDARP00000060705 | BLM RecQ-like helicase. | DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] | 0.993 |
blm | wrn | ENSDARP00000153051 | ENSDARP00000133164 | BLM RecQ-like helicase. | WRN RecQ-like helicase. | 0.734 |
dna2 | blm | ENSDARP00000103307 | ENSDARP00000153051 | DNA replication helicase/nuclease 2. | BLM RecQ-like helicase. | 0.960 |
dna2 | exo1 | ENSDARP00000103307 | ENSDARP00000073846 | DNA replication helicase/nuclease 2. | Exonuclease 1; 5'->3' double-stranded DNA exonuclease which may also contain a cryptic 3'->5' double-stranded DNA exonuclease activity. Also exhibits endonuclease activity against 5'-overhanging flap structures similar to those generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Required for DNA mismatch repair (MMR) (By similarity). | 0.998 |
dna2 | mlh1 | ENSDARP00000103307 | ENSDARP00000113460 | DNA replication helicase/nuclease 2. | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | 0.580 |
dna2 | mre11a | ENSDARP00000103307 | ENSDARP00000139437 | DNA replication helicase/nuclease 2. | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.931 |
dna2 | msh2 | ENSDARP00000103307 | ENSDARP00000027768 | DNA replication helicase/nuclease 2. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.484 |
dna2 | msh6 | ENSDARP00000103307 | ENSDARP00000131172 | DNA replication helicase/nuclease 2. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.692 |
dna2 | rad51 | ENSDARP00000103307 | ENSDARP00000060705 | DNA replication helicase/nuclease 2. | DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] | 0.947 |
dna2 | recql4 | ENSDARP00000103307 | ENSDARP00000103321 | DNA replication helicase/nuclease 2. | RecQ helicase-like 4. | 0.876 |
dna2 | wrn | ENSDARP00000103307 | ENSDARP00000133164 | DNA replication helicase/nuclease 2. | WRN RecQ-like helicase. | 0.981 |
exo1 | blm | ENSDARP00000073846 | ENSDARP00000153051 | Exonuclease 1; 5'->3' double-stranded DNA exonuclease which may also contain a cryptic 3'->5' double-stranded DNA exonuclease activity. Also exhibits endonuclease activity against 5'-overhanging flap structures similar to those generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Required for DNA mismatch repair (MMR) (By similarity). | BLM RecQ-like helicase. | 0.992 |
exo1 | dna2 | ENSDARP00000073846 | ENSDARP00000103307 | Exonuclease 1; 5'->3' double-stranded DNA exonuclease which may also contain a cryptic 3'->5' double-stranded DNA exonuclease activity. Also exhibits endonuclease activity against 5'-overhanging flap structures similar to those generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Required for DNA mismatch repair (MMR) (By similarity). | DNA replication helicase/nuclease 2. | 0.998 |
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