STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankk1Ankyrin repeat and kinase domain-containing 1. (733 aa)    
Predicted Functional Partners:
ttc12
Tetratricopeptide repeat domain 12.
 
 
 
 0.973
igsf3
Immunoglobulin superfamily, member 3.
    
 
 0.693
csdc2a
Cold shock domain-containing C2, RNA-binding a.
    
 
 0.672
uimc1
Uncharacterized protein.
   
  
 0.669
itln3
Intelectin 3.
   
 
 0.657
CSDC2
Cold shock domain containing C2.
    
 
 0.652
mtnr1ab
Melatonin receptor 1A b; Belongs to the G-protein coupled receptor 1 family.
      
 0.645
trappc6b
Trafficking protein particle complex subunit 6b; Component of a transport protein particle (TRAPP) complex that may function in specific stages of inter-organelle traffic. Specifically involved in the early development of neural circuitry, likely by controlling the frequency and amplitude of intracellular calcium transients implicated in the regulation of neuron differentiation and survival.
      
 0.624
helq
Helicase, POLQ-like.
  
 
 0.591
TRAPPC9
Si:dkey-218f9.10.
      
 0.583
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.