STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nefmaNeurofilament, medium polypeptide a; Belongs to the intermediate filament family. (849 aa)    
Predicted Functional Partners:
otog
Otogelin.
    
 
 0.561
tubb5
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 
 0.544
stmn2a
Stathmin; Belongs to the stathmin family.
   
 
 0.475
stmn4l
Stathmin; Belongs to the stathmin family.
   
 
 0.473
crygm2c
Crystallin, gamma M2c; Belongs to the beta/gamma-crystallin family.
   
  
 0.457
stmn3
Stathmin; Belongs to the stathmin family.
   
 
 0.457
stmn1b
Stathmin; Belongs to the stathmin family.
   
 
 0.431
stmn2b
Stathmin; Belongs to the stathmin family.
   
 
 0.429
stmn4
Stathmin; Belongs to the stathmin family.
   
 
 0.415
mbpa
Myelin basic protein a.
   
  
 0.412
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.