STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lyzLysozyme; Belongs to the glycosyl hydrolase 22 family. (151 aa)    
Predicted Functional Partners:
mpeg1.1
Macrophage-expressed 1, tandem duplicate 1.
   
  
 0.954
spi1b
SI:bY184L24.2.1 (Transcription factor spi1).
   
  
 0.853
mfap4
Microfibril-associated protein 4.
   
  
 0.847
lcp1
Plastin-2; Actin-binding protein. Plays a role in the activation of T- cells (By similarity).
   
  
 0.847
mpx
Myeloid-specific peroxidase.
   
  
 0.846
MFAP4
Wu:fj11g02.
   
  
 0.831
coro1a
Coronin; Belongs to the WD repeat coronin family.
   
  
 0.796
gata1a
GATA-binding protein 1a.
   
  
 0.750
hbae1.1
Hemoglobin, alpha embryonic 1.1.
   
 
 0.728
csf1ra
Macrophage colony-stimulating factor 1 receptor; Tyrosine-protein kinase that acts as cell-surface receptor for CSF1 and plays an essential role in the regulation of survival, proliferation and differentiation of hematopoietic precursor cells, especially mononuclear phagocytes, such as macrophages and monocytes. Plays an important role in innate immunity and in inflammatory processes. Plays an important role in the regulation of osteoclast proliferation and differentiation, the regulation of bone resorption, and is required for normal bone development. Promotes reorganization of the ac [...]
   
 
 0.697
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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