STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmf1TATA element modulatory factor 1. (1135 aa)    
Predicted Functional Partners:
gcc1
GRIP and coiled-coil domain-containing 1.
   
 
 0.874
golga1
Golgin A1.
   
 
 0.831
uso1
USO1 homolog, vesicle docking protein (Yeast).
   
  
 0.817
golga5
Golgin subfamily A member 5; Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport (By similarity).
   
  
 0.772
golga3
Golgin A3.
   
  
 0.754
gorasp1a
Golgi reassembly-stacking protein 1a.
   
  
 0.744
blzf1
Basic leucine zipper nuclear factor 1.
   
  
 0.731
gorasp2
Golgi reassembly-stacking protein 2.
      
 0.667
E7FAZ1_DANRE
Si:ch211-149b19.3.
   
  
 0.649
arfrp1
ADP-ribosylation factor-related protein 1.
     
 0.649
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.