STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtn3Reticulon. (236 aa)    
Predicted Functional Partners:
atl3
Atlastin 3.
    
 
 0.891
atl1
Atlastin GTPase 1.
    
 
 0.855
atl2
Atlastin GTPase 2.
   
 
 0.851
Ccpg1
Uncharacterized protein.
    
 
 0.842
ccpg1
Cell cycle progression 1.
   
 
 0.842
retreg1
Reticulophagy regulator 1.
    
 
 0.813
sec62
SEC62 homolog, preprotein translocation factor.
    
 
 0.791
pygmb
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 
 
    0.704
reep5
Receptor expression-enhancing protein.
   
 
 0.703
arl6ip1
ADP-ribosylation factor-like 6-interacting protein 1.
   
 
 0.674
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.