STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snap25bSynaptosomal-associated protein 25-B; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family (203 aa)    
Predicted Functional Partners:
stx1a
Syntaxin 1A (brain); Belongs to the syntaxin family
   
 0.997
vamp2
Vesicle-associated membrane protein 2
   
 0.994
stxbp1a
Syntaxin-binding protein 1a; Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family
   
 0.989
syt1a
Synaptotagmin-1a; Synaptotagmin Ia
   
 0.987
stx1b
Syntaxin 1b/2/3; Syntaxin 1B; Belongs to the syntaxin family
   
 0.978
vamp1
Vesicle-associated membrane protein 1
   
 0.975
zgc:92912
Zgc:92912 protein; Vesicle-associated membrane protein 1 (synaptobrevin 1)
   
 0.975
nsfa
N-ethylmaleimide-sensitive factor a
   
 
 0.973
syt5b
Synaptotagmin Vb
   
 0.941
syt1b
Novel protein similar to vertebrate synaptotagmin I (SYT1); Synaptotagmin Ib
   
 0.941
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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