STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc44a5aCholine transporter-like protein 5-A. (715 aa)    
Predicted Functional Partners:
pex11b
Peroxisomal biogenesis factor 11 beta.
   
  
 0.850
fam174b
Membrane protein FAM174B; Essential for Golgi structural integrity. Belongs to the FAM174 family.
   
  
 0.669
ppp1r42
Protein phosphatase 1 regulatory subunit 42; May regulate phosphatase activity of protein phosphatase 1 (PP1) complexes.
   
  
 0.667
macrod1
Mono-ADP ribosylhydrolase 1.
      
 0.650
tpp2
Tripeptidyl peptidase 2.
   
  
 0.621
clcn5a
Chloride channel protein.
   
  
 0.497
clcn1b
Chloride channel protein.
      
 0.491
clcn1a
Chloride channel protein.
      
 0.488
clcn4
Chloride channel protein.
   
  
 0.468
clcn2b
Chloride channel protein.
      
 0.462
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.