STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acbd5bAcyl-CoA-binding domain-containing protein 5-B; Binds medium- and long-chain acyl-CoA esters. (410 aa)    
Predicted Functional Partners:
pex11a
Peroxisomal biogenesis factor 11 alpha.
    
 
 0.709
LOC100537809
ATP-binding cassette, sub-family D (ALD), member 2.
      
 0.699
pex26
Peroxisomal biogenesis factor 26.
      
 0.693
abcd3a
ATP-binding cassette, sub-family D (ALD), member 3a.
   
  
 0.683
abcd3b
ATP-binding cassette, sub-family D (ALD), member 3b.
   
  
 0.681
pex3
Peroxisomal biogenesis factor 3.
    
 
 0.679
vapb
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.679
pex2
Peroxisomal biogenesis factor 2.
      
 0.662
atad1b
ATPase family AAA domain-containing protein 1-B; ATPase that plays a critical role in regulating the surface expression of AMPA receptors (AMPAR). Required for NMDA-stimulated AMPAR internalization in an ATPase-dependent manner (By similarity).
   
  
 0.657
pex11b
Peroxisomal biogenesis factor 11 beta.
   
 
 0.652
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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