STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf40aPRP40 pre-mRNA processing factor 40 homolog A (Yeast). (851 aa)    
Predicted Functional Partners:
rbm25b
RNA-binding motif protein 25b.
   
 
 0.904
sf3a1
Novel protein similar to human splicing factor 3a, subunit 1, 120kD (SF3A1).
   
 0.893
ppig
Peptidylprolyl isomerase G (cyclophilin G).
   
 
 0.874
cdk5rap1
CDK5 regulatory subunit-associated protein 1.
 
 
   0.828
uhmk1
U2AF homology motif (UHM) kinase 1.
    
 
 0.819
akirin1
Zgc:64050.
   
 
 0.795
htt
Huntingtin.
   
 
 0.779
rbm25a
RNA-binding motif protein 25a.
   
 
 0.771
sf3b1
Splicing factor 3b, subunit 1.
   
 0.757
tprb
Translocated promoter region b, nuclear basket protein.
   
   0.747
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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