STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccl27aC-C motif chemokine. (93 aa)    
Predicted Functional Partners:
ccl27b
Chemokine (C-C motif) ligand 27b.
     
 
0.900
LOC798694
Complement component 6.
      
 0.807
cxcl18b
Chemokine (C-X-C motif) ligand 18b.
     
 0.773
ccl39.3
Chemokine (C-C motif) ligand 39, duplicate 3.
     
 0.771
ccl19a.2
Chemokine (C-C motif) ligand 19a, tandem duplicate 2.
   
 
 0.730
ccl25b
Chemokine (C-C motif) ligand 25b.
     
 0.728
cxcl20
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
     
 0.714
ccr10
Chemokine (C-C motif) receptor 10; Belongs to the G-protein coupled receptor 1 family.
   
 
  0.704
ccl34a.4
Chemokine (C-C motif) ligand 34a, duplicate 4.
     
 0.666
ccl44
Chemokine (C-C motif) ligand 44.
   
  
 0.664
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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