STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc106bCoiled-coil domain-containing 106b. (357 aa)    
Predicted Functional Partners:
ccdc15
Coiled-coil domain-containing 15.
      
 0.865
slc4a2b
Anion exchange protein.
      
 0.745
snx15
Sorting nexin 15.
      
 0.701
rspry1
Ring finger and SPRY domain-containing 1.
      
 0.657
arhgef6
Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6.
      
 0.644
nudt13
Nudix (nucleoside diphosphate-linked moiety X)-type motif 13.
      
 0.598
zc3h15
Zinc finger CCCH domain-containing protein 15; Protects drg1 from proteolytic degradation.
      
 0.595
fbxo9
F-box only protein 9; Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins and acts as a regulator of mTOR signaling.
      
 0.580
zgc:153293
Zgc:153293.
      
 0.573
morf4l1
Mortality factor 4-like 1.
      
 0.558
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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