STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zgc:136930Zgc:136930; Belongs to the intermediate filament family. (476 aa)    
Predicted Functional Partners:
ube2v1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
 0.810
krt91
Keratin 91; Belongs to the intermediate filament family.
   
0.675
E7F6W3_DANRE
Si:ch211-156l18.7; Belongs to the intermediate filament family.
    
0.659
krtt1c19e
Keratin type 1 c19e; Belongs to the intermediate filament family.
   
0.657
krt95
Kertain 95; Belongs to the intermediate filament family.
   
0.642
krt15
Keratin 15; Belongs to the intermediate filament family.
   
0.640
krt98
Keratin 98; Belongs to the intermediate filament family.
    
0.637
krt99
Novel keratin protein (Zgc:110712); Belongs to the intermediate filament family.
    
0.634
krt94
Keratin 94; Belongs to the intermediate filament family.
   
0.630
wu:fk65c09
Wu:fk65c09; Belongs to the intermediate filament family.
    
0.630
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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