Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abhd13Protein ABHD13. (337 aa)    
Predicted Functional Partners:
igbp1
Immunoglobulin (CD79A)-binding protein 1.
      
 0.849
tnfsf13
TNF superfamily member 13; Belongs to the tumor necrosis factor family.
      
 0.782
ccdc126
Coiled-coil domain-containing 126.
      
 0.703
abhd16a
Abhydrolase domain-containing 16A.
      
 0.665
zdhhc24
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.662
rbmx
RNA-binding motif protein, X chromosome; RNA-binding protein that plays several role in the regulation of pre- and post-transcriptional processes. Implicated in tissue- specific regulation of gene transcription and alternative splicing of pre-mRNAs. Associates with chromatin. Associates with nascent mRNAs transcribed by RNA polymerase II. Component of the supraspliceosome complex that regulates pre-mRNA alternative splice site selection. Binds non-specifically to pre-mRNAs (By similarity). Required for embryonic development, in particular of the brain.
    
 
 0.658
lig4
DNA ligase.
   
  
 0.641
lyplal1
Lysophospholipase-like 1.
      
 0.622
zfand6
Zinc finger, AN1-type domain 6.
      
 0.621
tnfsf12
Tumor necrosis factor superfamily member 12; Belongs to the tumor necrosis factor family.
      
 0.594
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.