STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpt1bCarnitine palmitoyltransferase 1B (muscle). (770 aa)    
Predicted Functional Partners:
acacb
Acetyl-CoA carboxylase beta.
     
 0.947
cpt2
Carnitine O-palmitoyltransferase 2, mitochondrial.
  
 
0.935
acsl3a
Acyl-CoA synthetase long chain family member 3a.
   
 
 0.771
acsbg1
Acyl-CoA synthetase bubblegum family member 1.
   
 
 0.763
acsl4a
Acyl-CoA synthetase long chain family member 4a.
   
 
 0.741
acsl4b
Acyl-CoA synthetase long chain family member 4b.
   
 
 0.686
acsl3b
Acyl-CoA synthetase long chain family member 3b.
   
 
 0.686
acsl1a
Acyl-CoA synthetase long chain family member 1a.
   
 
 0.683
acsl1b
Acyl-CoA synthetase long chain family member 1b.
   
 
 0.683
acsl2
Acyl-CoA synthetase long chain family member 2.
   
 
 0.675
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.