STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mid1Midline 1. (667 aa)    
Predicted Functional Partners:
mid1ip1l
Mid1-interacting protein 1-like; Involved in stabilization of microtubules. May play a role in the regulation of lipogenesis (By similarity); Belongs to the SPOT14 family.
   
 
 0.706
trim2b
Tripartite motif-containing 2b.
      
 0.668
igbp1
Immunoglobulin (CD79A)-binding protein 1.
    
 
 0.577
ednrbb
Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family.
   
  
 0.572
fnbp1l
Formin-binding protein 1-like.
   
  
 0.546
fn1b
Fibronectin 1b.
    
 
 0.488
rnf207b
RING finger protein 207; Plays a role in cardiac repolarization possibly by stabilizing membrane expression of the potassium channel kcnh6a/zerg, or by assisting its synthesis, folding or export from the endoplasmic reticulum, in a heat shock protein-dependent manner.
   
  
 0.460
trim37
Tripartite motif-containing 37.
   
  
 0.455
arf3b
Novel protein similar to human ADP-ribosylation factor 1 (ARF1); Belongs to the small GTPase superfamily. Arf family.
    
 
 0.445
lman1
Lectin, mannose-binding, 1.
   
  
 0.424
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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