STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GARNL3GTPase-activating Rap/Ran-GAP domain-like protein 3; Belongs to the GARNL3 family. (1015 aa)    
Predicted Functional Partners:
ralgps1
Ras-specific guanine nucleotide-releasing factor RalGPS1; Guanine nucleotide exchange factor. May be involved in cytoskeletal organization.
 
 
  
 0.878
stxbp1a
Syntaxin-binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.808
ralba
V-ral simian leukemia viral oncogene homolog Ba (ras-related).
    
 
 0.710
sptan1
Spectrin alpha, non-erythrocytic 1.
      
 0.666
tbrg1
Transforming growth factor beta regulator 1.
   
  
 0.570
carnmt1
Carnosine N-methyltransferase 1.
      
 0.569
trappc10
Trafficking protein particle complex 10.
      
 0.569
inpp5l
Inositol polyphosphate-5-phosphatase L.
   
  
 0.568
doc2b
Double C2-like domains, beta.
   
  
 0.482
ei24
EI24 autophagy-associated transmembrane protein.
      
 0.477
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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