STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nyxNyctalopin. (469 aa)    
Predicted Functional Partners:
trpm1a
Transient receptor potential cation channel, subfamily M, member 1a.
      
 0.874
cacna1fb
Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.
   
  
 0.812
CABP4
Si:cabz01076231.1.
    
 
 0.766
grm6a
Glutamate receptor, metabotropic 6a.
   
  
 0.761
cabp4
Calcium-binding protein 4.
    
 
 0.761
gap43
Growth-associated protein 43.
   
  
 0.651
robo2
Roundabout, axon guidance receptor, homolog 2 (Drosophila).
   
 
 0.634
robo2-2
Roundabout, axon guidance receptor, homolog 2 (Drosophila).
   
 
 0.634
alg5
SMAD family member 9.
      
 0.599
robo1
Roundabout, axon guidance receptor, homolog 1 (Drosophila).
   
 
 0.588
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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