STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rorbRAR-related orphan receptor B. (466 aa)    
Predicted Functional Partners:
otx5
Orthodenticle homolog 5.
   
 
 0.724
gnat2
Guanine nucleotide-binding protein (G protein), alpha transducing activity polypeptide 2.
      
 0.722
ncor2
Nuclear receptor corepressor 2.
    
 0.664
otx2b
Homeobox protein OTX2; May play a role in very early embryogenesis, gastrulation, and the development and subdivision of the diencephalon and the midbrain.
   
 
 0.653
gnat1
Guanine nucleotide-binding protein (G protein), alpha transducing activity polypeptide 1.
      
 0.652
bhlhe40
Basic helix-loop-helix family, member e40.
    
 
 0.627
crx
Cone-rod homeobox.
   
 
 0.617
LAMP5
Lysosome-associated membrane glycoprotein 5; Plays a role in short-term synaptic plasticity in a subset of GABAergic neurons in the brain.
      
 0.608
arntl2
Aryl hydrocarbon receptor nuclear translocator-like 2.
    
 
 0.605
nrl
Leucine zipper transcription factor.
   
  
 0.589
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.