STRINGSTRING
edc4 protein (Danio rerio) - STRING interaction network
"edc4" - Enhancer of mRNA-decapping protein 4 in Danio rerio
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
edc4Enhancer of mRNA-decapping protein 4; In the process of mRNA degradation, seems to play a role in mRNA decapping (1384 aa)    
Predicted Functional Partners:
dcp1a
Decapping mRNA 1A; DCP1 decapping enzyme homolog A (S. cerevisiae) (439 aa)
     
  0.998
edc3
Enhancer of mRNA-decapping protein 3; Binds single-stranded RNA. Involved in the process of mRNA degradation and in the positive regulation of mRNA decapping (By similarity) (506 aa)
     
  0.998
dcp1b
Decapping mRNA 1B; DCP1 decapping enzyme homolog B (S. cerevisiae) (499 aa)
     
  0.994
patl1
Protein PAT1 homolog 1; RNA-binding protein involved in deadenylation-dependent decapping of mRNAs, leading to the degradation of mRNAs. Acts as a scaffold protein that connects deadenylation and decapping machinery. Required for cytoplasmic mRNA processing body (P-body) assembly (By similarity) (765 aa)
     
 
  0.990
lsm1
LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (133 aa)
         
  0.984
ddx6
DEAD (Asp-Glu-Ala-Asp) box polypeptide 6; Belongs to the DEAD box helicase family (485 aa)
     
  0.984
lsm3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation-associated (102 aa)
         
  0.972
lsm7
LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) (103 aa)
     
 
  0.965
smx5
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3’-terminal U-tract of U6 snRNA (95 aa)
         
  0.964
lsm4
LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) (143 aa)
     
 
  0.962
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: medium (43%) [HD]