STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc35a4Probable UDP-sugar transporter protein SLC35A4. (71 aa)    
Predicted Functional Partners:
tmem184c
Transmembrane protein 184C.
   
  
 0.899
pnisr
PNN-interacting serine/arginine-rich protein.
      
 0.864
ptp4a1
Protein tyrosine phosphatase 4A1.
      
 0.840
pnrc2
Proline-rich nuclear receptor coactivator 2; Involved in nonsense-mediated mRNA decay (NMD) by acting as a bridge between the mRNA decapping complex and the NMD machinery. May act by targeting the NMD machinery to the P-body and recruiting the decapping machinery to aberrant mRNAs. Required for upf1/rent1 localization to the P-body. Also acts as a nuclear receptor coactivator (By similarity); Belongs to the PNRC family. PNRC2 subfamily.
      
 0.807
mapk6
Extracellular signal-regulated kinase 3.
   
  
 0.734
eif5
Eukaryotic translation initiation factor 5.
      
 0.670
bach2b
BTB and CNC homology 1, basic leucine zipper transcription factor 2b.
      
 0.662
cdh11
Cadherin 11, type 2, OB-cadherin (osteoblast); Cadherins are calcium-dependent cell adhesion proteins.
      
 0.626
kat6a
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
  
 0.560
fgf9
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.540
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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