STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thbs3bThrombospondin-3b; Adhesive glycoprotein that mediates cell-to-cell and cell-to- matrix interactions. Can bind to fibrinogen, fibronectin, laminin and type V collagen (By similarity); Belongs to the thrombospondin family. (929 aa)    
Predicted Functional Partners:
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
    
 0.901
sdc4
Syndecan 4.
     
  0.900
acy3.2
N-acyl-aromatic-L-amino acid amidohydrolase (carboxylate-forming) B; Plays an important role in deacetylating mercapturic acids in kidney proximal tubules; Belongs to the AspA/AstE family. Aspartoacylase subfamily.
    
 
 0.814
krtcap2
Keratinocyte-associated protein 2.
    
 
 0.748
scamp3
Secretory carrier-associated membrane protein.
      
 0.742
itgb4
Integrin beta.
   
 0.686
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.677
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
   
  0.675
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.674
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.672
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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