STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmod3Leiomodin-3; Essential for the organization of sarcomeric thin filaments in skeletal muscle; Belongs to the tropomodulin family. (670 aa)    
Predicted Functional Partners:
kbtbd13
Kelch repeat and BTB (POZ) domain-containing 13.
   
  
 0.850
neb
Nebulin.
   
 
 0.803
tnnt1
Troponin T type 1 (skeletal, slow).
   
  
 0.752
tnnt2c
Troponin T1, skeletal, slow.
   
  
 0.746
tpm2
Tropomyosin 2 (beta); Belongs to the tropomyosin family.
   
 
 0.746
Mypn
Uncharacterized protein.
   
  
 0.743
cfl2
Cofilin 2 (Muscle); Belongs to the actin-binding proteins ADF family.
      
 0.707
myoz2a
Myozenin 2a.
   
  
 0.707
tpm3
Tropomyosin 3; Belongs to the tropomyosin family.
   
 
 0.680
zgc:114123
Zgc:114123.
      
 0.669
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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