STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmed1bTransmembrane p24-trafficking protein 1b. (226 aa)    
Predicted Functional Partners:
pmp22b
Peripheral myelin protein 22b.
   
  
 0.868
gfi1aa
Growth factor-independent 1A transcription repressor a.
    
 
 0.652
tmed10
Transmembrane emp24-like trafficking protein 10 (Yeast).
   
 
 0.631
tmed2
Transmembrane p24-trafficking protein 2.
   
 
0.551
gata2b
GATA-binding protein 2b.
      
 0.550
mfap4
Microfibril-associated protein 4.
      
 0.540
MFAP4
Wu:fj11g02.
      
 0.540
tmed9
Transmembrane p24-trafficking protein 9.
   
 
0.420
tmed4
Transmembrane p24-trafficking protein 4.
    
 
 0.419
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.