STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf11bRing finger protein 11b. (154 aa)    
Predicted Functional Partners:
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 
 0.772
tax1bp1b
Tax1-binding protein 1 homolog B; May have anti-apoptotic activity.
   
 
 0.769
itcha
E3 ubiquitin-protein ligase.
    
 
 0.753
itchb
E3 ubiquitin-protein ligase.
    
 
 0.753
ube2na
Ubiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.645
ube2nb
Ubiquitin-conjugating enzyme E2N-like; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.645
nfatc2ip
Nuclear factor of-activated T cells 2-interacting protein.
   
 
 0.603
hbp1
HMG-box transcription factor 1.
   
  
 0.565
smurf1
E3 ubiquitin-protein ligase.
    
 
 0.523
smurf2
E3 ubiquitin-protein ligase SMURF2; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
    
 
 0.523
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.