STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ralgps1Ras-specific guanine nucleotide-releasing factor RalGPS1; Guanine nucleotide exchange factor. May be involved in cytoskeletal organization. (581 aa)    
Predicted Functional Partners:
GARNL3
GTPase-activating Rap/Ran-GAP domain-like protein 3; Belongs to the GARNL3 family.
 
 
  
 0.878
vps50-2
VPS50 EARP/GARPII complex subunit.
      
 0.836
vps50
VPS50 EARP/GARPII complex subunit.
      
 0.835
kyat1
Kynurenine aminotransferase 1.
      
 0.831
rabgef1l
RAB guanine nucleotide exchange factor (GEF) 1,-like.
   
 
 0.747
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
   
 
 0.747
tom1l2
Target of myb1-like 2 membrane-trafficking protein; Belongs to the TOM1 family.
   
  
 0.746
TOM1L2
Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.
      
 0.744
LOC100149241
Transmembrane channel-like protein.
    
 
 0.703
angptl5
Angiopoietin-like 5.
      
 0.693
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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