STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpr85Probable G protein-coupled receptor 85; Orphan receptor; Belongs to the G-protein coupled receptor 1 family. (377 aa)    
Predicted Functional Partners:
plagl2
Pleiomorphic adenoma gene-like 2.
      
 0.762
tmem168a
Transmembrane protein 168-A.
      
 0.743
ptchd4
Patched domain-containing protein 1.
   
  
 0.646
zic1
ZIC family member 1 (Odd-paired homolog, Drosophila).
   
  
 0.584
snx33
Sorting nexin.
      
 0.566
zbtb10
Zinc finger and BTB domain-containing 10.
      
 0.557
itgbl1
Integrin, beta-like 1.
   
  
 0.541
coq10b
Coenzyme Q-binding protein COQ10 homolog B, mitochondrial; Required for the function of coenzyme Q in the respiratory chain. May serve as a chaperone or may be involved in the transport of Q6 from its site of synthesis to the catalytic sites of the respiratory complexes (By similarity).
      
 0.540
MDFIC
Si:ch211-262n1.4.
      
 0.540
panx2
Pannexin; Structural component of the gap junctions and the hemichannels; Belongs to the pannexin family.
   
  
 0.484
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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