STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabpaGA-binding protein transcription factor, alpha subunit. (455 aa)    
Predicted Functional Partners:
gabpb1
GA-binding protein transcription factor subunit beta 1.
   
 0.990
gabpb2a
GA-binding protein transcription factor subunit beta 2a.
   
 
 0.803
gabpb2b
GA-binding protein transcription factor subunit beta 2b.
   
 
 0.803
atp5pf
ATP synthase-coupling factor 6, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain; Belongs to the eukaryotic ATPase subunit F6 family.
      
 0.695
tfam
Transcription factor A, mitochondrial.
   
  
 0.595
acot13
Acyl-CoA thioesterase 13.
      
 0.561
ENSDARP00000154204
Si:ch211-140m22.7.
      
 0.557
ppargc1b
Peroxisome proliferator-activated receptor gamma, coactivator 1 beta.
      
 0.477
runx1
Runt-related transcription factor.
   
 
 0.476
nrf1
Nuclear respiratory factor 1; Probable transcription factor that is required for normal development of the outer retina.
   
  
 0.474
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.