STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam3cProtein FAM3C; Involved in retinal laminar formation; Belongs to the FAM3 family. (227 aa)    
Predicted Functional Partners:
cped1
Cadherin-like and PC-esterase domain-containing 1.
      
 0.848
tmem126a
Transmembrane protein 126A.
      
 0.730
ing3
Inhibitor of growth protein.
      
 0.695
ccdc170
Coiled-coil domain-containing 170.
      
 0.692
tmub1
Transmembrane and ubiquitin-like domain-containing protein 1; May contribute to the regulation of translation during cell- cycle progression. May contribute to the regulation of cell proliferation (By similarity). The membrane form is involved in sterol- regulated ubiquitination and degradation of HMG-CoA reductase HMGCR. May be involved in centrosome assembly.
      
 0.680
wfikkn2a
Info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain-containing 2a.
      
 0.663
COLEC10
Si:ch211-93i7.4.
      
 0.647
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
      
 0.620
hdgfl2
Hepatoma-derived growth factor-related protein 2; Belongs to the HDGF family.
      
 0.597
gbp4
Guanylate-binding protein 4.
      
 0.553
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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