STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
taf15TAF15 RNA polymerase II, TATA box-binding protein (TBP)-associated factor. (434 aa)    
Predicted Functional Partners:
fus
FUS RNA-binding protein.
  
 
0.906
taf13
TATA-box-binding protein-associated factor 13.
   
 0.893
taf5
TAF5 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
 0.835
tbp
TATA-box-binding protein; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II (By similarity). Members of the TBP family are differentially required for transcription and development during early embryogenesis. Regulates mRNA levels in the early embryo by both transcriptional and post-transcriptional mechanisms. Required for transcription of a subs [...]
   
 0.830
tardbp
TAR DNA-binding protein.
   
 
 0.830
taf12
TAF12 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
  0.828
taf4b
TAF4B RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
  0.827
taf4a
TAF4A RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
  0.827
taf11
TAF11 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
  0.814
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
   
 
 0.809
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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