STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thbs4bThrombospondin-4-B; Adhesive glycoprotein that mediates cell-to-cell and cell-to- matrix interactions and may be involved in various processes including cellular proliferation, migration, adhesion and attachment. May play a role in ER stress response (By similarity); Belongs to the thrombospondin family. (949 aa)    
Predicted Functional Partners:
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
    
 0.932
sdc4
Syndecan 4.
     
  0.900
itga5
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
   
 0.804
itga10
Integrin, alpha 10; Belongs to the integrin alpha chain family.
   
 
 0.753
scxa
Scleraxis bHLH transcription factor a.
      
 0.745
itga6a
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
    
 0.743
itga11a
Integrin, alpha 11a; Belongs to the integrin alpha chain family.
   
 
 0.742
itga2.2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
     
 0.740
itga6b
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
   
 0.725
itga6l
Integrin, alpha 6,-like; Belongs to the integrin alpha chain family.
    
 0.717
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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