STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zgc:162879Ras and EF-hand domain-containing protein; Binds predominantly GDP, and also GTP. (663 aa)    
Predicted Functional Partners:
bicdl2
BICD family-like cargo adapter 2.
   
 
 0.757
cpvl
Carboxypeptidase, vitellogenic-like; Belongs to the peptidase S10 family.
      
 0.754
bicdl2l
Bicaudal-D-related protein 2-like.
    
 
 0.748
bicdl1
BICD family-like cargo adapter 1; Component of secretory vesicle machinery in developing neurons that acts as a regulator of neurite outgrowth.
    
 
 0.739
ptgir
Prostaglandin I2 receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.672
HOOK3
Hook microtubule tethering protein 3.
    
 
 0.670
rab11fip3
Rab11 family-interacting protein 3.
      
 0.666
hook1
Protein Hook homolog 1; May function to promote vesicle trafficking and/or fusion.
    
 
 0.596
psat1
Phosphoserine aminotransferase.
      
 0.539
bicd2
Bicaudal D homolog 2 (Drosophila).
      
 0.505
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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