STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
calcoco1aCalcium-binding and coiled-coil domain-containing protein 1; May function as a coactivator for aryl hydrocarbon and nuclear receptors; Belongs to the CALCOCO family. (640 aa)    
Predicted Functional Partners:
ccpg1
Cell cycle progression 1.
   
 
 0.748
Ccpg1
Uncharacterized protein.
   
 
 0.746
spsb3a
SplA/ryanodine receptor domain and SOCS box-containing 3a.
   
  
 0.723
spsb3b
SplA/ryanodine receptor domain and SOCS box-containing 3b.
      
 0.700
ENSDARP00000131171
Si:dkey-23n7.10.
      
 0.700
sec62
SEC62 homolog, preprotein translocation factor.
   
  
 0.676
zfyve9b
Zinc finger, FYVE domain-containing 9b.
      
 0.670
ankrd29
Ankyrin repeat domain-containing protein 29.
    
 
 0.658
sycp1
Synaptonemal complex protein 1.
      
 0.644
ngrn
Neugrin, neurite outgrowth-associated.
   
  
 0.638
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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