STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fip1l1bPre-mRNA 3'-end-processing factor FIP1; Involved in mRNA processing; Belongs to the FIP1 family. (570 aa)    
Predicted Functional Partners:
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.997
cpsf1
Cleavage and polyadenylation-specific factor 1.
   
 0.996
wdr33
WD repeat domain 33.
   
 0.995
cpsf3
Cleavage and polyadenylation-specific factor 3.
   
 0.994
sympk
Symplekin.
   
 0.993
cpsf4
Cleavage and polyadenylation-specific factor 4.
    
 0.991
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.989
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.977
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.973
wdr82
WD repeat-containing protein 82; Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus; Belongs to the WD repeat SWD2 family.
   
 0.965
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.