STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttpalTocopherol (alpha) transfer protein-like. (341 aa)    
Predicted Functional Partners:
E7F755_DANRE
Si:dkey-15j16.6.
      
 0.823
X1WGL5_DANRE
Si:dkey-23k10.3.
      
 0.823
nitr3r.1l
Novel immune-type receptor 3,-related 1-like.
      
 0.807
nr2f1b
Nuclear receptor subfamily 2 group F member 1-B; Putative transcription factor that is required in photoreceptor cells precursors during eye development; Belongs to the nuclear hormone receptor family. NR2 subfamily.
 
  
 
 0.746
olfce2
Olfactory receptor C family, e2.
      
 0.744
mafaa
Transcription factor MafAa; Transcription factor, possibly involved in transcription regulation during lens development, including that of crystallin genes. Specifically binds to the alphaCE2 enhancer element of crystallin gene.
      
 0.740
LOC562466
Cyclic nucleotide-gated channel subunit beta 3, tandem duplicate 2.
      
 0.575
tead1b
TEA domain family member 1b.
      
 0.552
eif4ebp1
Eukaryotic translation initiation factor 4E-binding protein 1.
      
 0.480
gpx4b
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
  
 0.472
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.