STRINGSTRING
sdf4 protein (Danio rerio) - STRING interaction network
"sdf4" - 45 kDa calcium-binding protein in Danio rerio
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdf445 kDa calcium-binding protein; May regulate calcium-dependent activities in the endoplasmic reticulum lumen or post-ER compartment (356 aa)    
Predicted Functional Partners:
lancl1
LanC-like protein 1; Binds glutathione (405 aa)
           
  0.817
megf6a
Multiple EGF-like-domains 6a (1513 aa)
     
   
  0.799
stxbp2
Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family (595 aa)
     
   
  0.715
clec14a
C-type lectin domain family 14, member A (368 aa)
           
  0.706
atp2c1
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium (922 aa)
           
  0.682
dnajc16
DnaJ (Hsp40) homolog, subfamily C, member 16 (781 aa)
     
   
  0.681
pgpep1
Pyroglutamyl-peptidase I (208 aa)
           
  0.681
ENSDARG00000077813
Si-dkey-34f9.3 (162 aa)
           
  0.676
pvalb6
Parvalbumin isoform 4b; Parvalbumin 6; Belongs to the parvalbumin family (109 aa)
           
  0.670
pvalb7
Parvalbumin-7; In muscle, parvalbumin is thought to be involved in relaxation after contraction. It binds two calcium ions (By similarity) (109 aa)
           
  0.670
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (11%) [HD]