STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pick1Protein-interacting with prkca 1. (406 aa)    
Predicted Functional Partners:
tspan7b
Tetraspanin.
     
 0.957
gria2b
Glutamate receptor, ionotropic, AMPA 2b.
    
 0.906
grip1
Glutamate receptor-interacting protein 1.
    
 0.903
gria2a
Glutamate receptor, ionotropic, AMPA 2a.
    
 
 0.820
grip2b
Glutamate receptor-interacting protein 2b.
   
 0.793
gopc
Golgi-associated PDZ and coiled-coil motif-containing.
   
 
 0.787
gria1a
Glutamate receptor, ionotropic, AMPA 1a.
    
 0.731
gria4a
Glutamate receptor, ionotropic, AMPA 4a.
    
 0.731
gria3a
Glutamate receptor, ionotropic, AMPA 3a.
    
 0.731
gria3b
Glutamate receptor, ionotropic, AMPA 3b.
    
 0.731
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.